Fluid flow generates bacterial conjugation hotspots by increasing the rate of shear-driven cell-cell encounters

Conjugation accelerates bacterial evolution by enabling bacteria to acquire genes horizontally from their neighbors. Because plasmid donors must physically connect with recipients to allow plasmid transfer, environmental fluid flows may increase conjugation rates by increasing cell-cell encounters through mixing driven by fluid shear, which creates relative movement between donors and recipients. However, existing experimental assays do not directly control cell-cell encounters, which hinders the establishment of a connection between the population-level conjugation rate and the microscale mechanisms that bring cells together. Here, we performed conjugation experiments between E. coli bacteria, varying the shear flow to control the rate of cell-cell encounters. We discovered that the conjugation rate increases with shear until it peaks at an optimal shear rate of ≈ 100/s, reaching a value five-fold higher than the baseline set by diffusion-driven encounters. This optimum marks the transition from a regime in which shear promotes conjugation by increasing the rate of cell-cell encounters to a regime in which shear disrupts conjugation. Fluid flows are widely present in aquatic systems, gut, and soil, and our results indicate that fluid shear could induce hotspots of bacterial conjugation in the environment.