23rd Human Proteome Organization World Congress

Evaluation of midia-PASEF acquisition mode for the analysis of phosphoproteome samples

New Technology: MS-based Proteomics

Poster presentation

Unlocking the proteomic potential of FFPE tissues with BeatBox® and iST: a xylene-free, high-throughput workflow for in-depth proteome analysis

New Technology: Sample Preparation

TIMS DIA-NN 3.0: improved algorithms to enhance peptide detection with confidence and accuracy

Data Integration: With Bioinformatics to Biological Knowledge

TIMSrescore: timsTOF-optimized PSM rescoring boosts identification rates for immunopeptidomics

New Technology: AI and Bioinformatics in Mass Spectrometry

A CCS-centric HLA-specific trained de novo module for precise and accurate real-time immunopeptide identification on the Bruker ProteoScape platform

midiaID: a flexible pipeline for the analysis of midiaPASEF data

A systematic optimization of diagonal-PASEF acquisition for low- to medium-input acquisitions on the timsTOF HT mass spectrometer

A novel supervised learning algorithm for real-time collision energy selection to optimize peptide fragmentation in mass spectrometry

Characterizing the performance of midia-PASEF – maximizing information content in data-independent acquistion

Maximize the Potential of Your Data: Scalable Bioinformatics to Access Meaningful Results

In the modern landscape of mass spectrometry proteomics, bioinformatics has become a cornerstone for generating, managing, and interpreting data efficiently and effectively. Our lunch seminar will delve into this critical aspect, showcasing how scalable bioinformatics solutions can prevent data analysis bottlenecks and ensure rapid, versatile results. Hear from our head of research for Bruker ProteoScape™ (BPS), Jonathan Krieger Ph.D., about our strategies to provide impactful solutions, followed by an insightful talk on rescoring MS2 data to maximize its value by members of the CompOmics group run by Prof. Lennart Martens at the University of Ghent. Finally, we will join Lukas Reiter, Ph.D., CTO at Biognosys, to discover the enhanced capabilities of Spectronaut 19, specifically optimized for timsTOF data, and see how it can elevate your proteomics research.&nbsp;Don't miss this opportunity to learn how advanced bioinformatics can influence your project's success.

Jonathan Krieger

Einsätze

Di., 22.10.

Mi., 23.10.